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1

A neural net model for multiple memory domains

Photios Anninos, Michael Kokkinidis

Journal:

Journal of Theoretical Biology

Year:

1984

Language:

english

File:

PDF, 599 KB

english, 1984

2

Playing the “Harp”: Evolution of Our Understanding of hrp/hrc Genes 1

Tampakaki, Anastasia P., Skandalis, Nicholas, Gazi, Anastasia D., Bastaki, Marina N., Panagiotis F., Sarris, Charova, Spyridoula N., Kokkinidis, Michael, Panopoulos, Nickolas J.

Journal:

Annual Review of Phytopathology

Year:

2010

Language:

english

File:

PDF, 869 KB

english, 2010

3

Tolerance to d-amphetamine: Behavioral specificity

Larry Kokkinidis, Michael D. Walsh, Robert Lahue, Hymie Anisman

Journal:

Year:

1976

Language:

english

File:

PDF, 280 KB

english, 1976

4

The crystal structures of the synthetic C-terminal octa- and dodecapeptides of trichovirin

Renate Geßmann, Panaiotis Benos, Hans Brückner, Michael Kokkinidis

Journal:

Journal of Peptide Science

Year:

1999

Language:

english

File:

PDF, 187 KB

english, 1999

5

A Fast and Inexpensive Procedure for Drying Polyacrylamide Gels

Vasiliki E. Fadouloglou, Nicholas M. Glykos, Michael Kokkinidis

Journal:

Analytical Biochemistry

Year:

2000

Language:

english

File:

PDF, 69 KB

english, 2000

6

Determination of protein oligomerization state: Two approaches based on glutaraldehyde crosslinking

Vasiliki E. Fadouloglou, Michael Kokkinidis, Nicholas M. Glykos

Journal:

Analytical Biochemistry

Year:

2008

Language:

english

File:

PDF, 449 KB

english, 2008

7

Crystallization of the E. coli polyamine-induced protein: a novel procedure based on the concept of ionic strength reducers

Yannis Papanikolau, Renate Gessmann, Kyriacos Petratos, Kazuei Igarashi, Michael Kokkinidis

Journal:

Journal of Crystal Growth

Year:

2000

Language:

english

File:

PDF, 189 KB

english, 2000

8

Noisy neural nets exhibiting memory domains

Photios Anninos, Michael Kokkinidis, Andreas Skouras

Journal:

Journal of Theoretical Biology

Year:

1984

Language:

english

File:

PDF, 689 KB

english, 1984

9

Engineering the properties of a cold active enzyme through rational redesign of the active site

Iason Tsigos, Konstantinos Mavromatis, Maria Tzanodaskalaki, Charalambos Pozidis, Michael Kokkinidis, Vassilis Bouriotis

Journal:

Year:

2001

Language:

english

File:

PDF, 470 KB

english, 2001

10

Exploring the role of a glycine cluster in cold adaptation of an alkaline phosphatase

Konstantinos Mavromatis, Iason Tsigos, Maria Tzanodaskalaki, Michael Kokkinidis, Vassilis Bouriotis

Journal:

Year:

2002

Language:

english

File:

PDF, 475 KB

english, 2002

11

Alkaline phosphatase from the Antarctic strain TAB5 : Properties and psychrophilic adaptations

Maria Rina, Charalambos Pozidis, Konstantinos Mavromatis, Maria Tzanodaskalaki, Michael Kokkinidis, Vassilis Bouriotis

Journal:

Year:

2000

Language:

english

File:

PDF, 1.39 MB

english, 2000

12

Structural polymorphism of a marginally stable 4-α-helical bundle. images of a trapped molten globule?

Nicholas M. Glykos, Michael Kokkinidis

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

File:

PDF, 25 KB

2004

13

Correlation between protein stability and crystal properties of designed ROP variants

Dr. Michael Kokkinidis, Metaxia Vlassi, Yannis Papanikolaou, Dina Kotsifaki, Adrian Kingswell, Demetrius Tsernoglou, Hans-Juuml, rgen Hinz

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1993

Language:

english

File:

PDF, 261 KB

english, 1993

14

Characterization of a Photosystem II core and its three-dimensional crystals

Constantina Fotinou, Michael Kokkinidis, Günter Fritzsch, Winfried Haase, Hartmut Michel, Demetrios F. Ghanotakis

Journal:

Photosynthesis Research

Year:

1993

Language:

english

File:

PDF, 1.36 MB

english, 1993

15

In silico analysis reveals multiple putative type VI secretion systems and effector proteins in Pseudomonas syringae pathovars

PANAGIOTIS F. SARRIS, NICHOLAS SKANDALIS, MICHAEL KOKKINIDIS, NICKOLAS J. PANOPOULOS

Journal:

Molecular Plant Pathology

Year:

2010

Language:

english

File:

PDF, 1.05 MB

english, 2010

16

Coiled-coils in type III secretion systems: structural flexibility, disorder and biological implications

Anastasia D. Gazi, Spyridoula N. Charova, Nicholas J. Panopoulos, Michael Kokkinidis

Journal:

Cellular Microbiology

Year:

2009

Language:

english

File:

PDF, 429 KB

english, 2009

17

Crystal structure of the BcZBP, a zinc-binding protein from Bacillus cereus : Functional insights from structural data

Vasiliki E. Fadouloglou, Alexandra Deli, Nicholas M. Glykos, Emmanuel Psylinakis, Vassilis Bouriotis, Michael Kokkinidis

Journal:

Year:

2007

Language:

english

File:

PDF, 1.15 MB

english, 2007

18

Restored heptad pattern continuity does not alter the folding of a four-α-helix bundle

Vlassi, Metaxia, Steif, Christian, Weber, Peter, Tsernoglou, Demetrius, Wilson, Keith S., Hinz, Hans-Jürgen, Kokkinidis, Michael

Journal:

Natural Structural Biology

Year:

1994

File:

PDF, 1.07 MB

1994

19

Endonucleases induced TRAIL-insensitive apoptosis in ovarian carcinoma cells

Tessa M. Geel, Gregor Meiss, Bernardina T. van der Gun, Bart Jan Kroesen, Lou F. de Leij, Mindaugas Zaremba, Arūnas Šilanskas, Michael Kokkinidis, Alfred Pingoud, Marcel H. Ruiters, Pamela M. McLaughl

Journal:

Experimental Cell Research

Year:

2009

Language:

english

File:

PDF, 1.57 MB

english, 2009

20

Protein plasticity to the extreme: changing the topology of a 4-α-helical bundle with a single amino acid substitution

Nicholas M Glykos, Gianni Cesareni, Michael Kokkinidis

Journal:

Year:

1999

Language:

english

File:

PDF, 1.45 MB

english, 1999

21

Dimer-to-tetramer transformation: loop excision dramatically alters structure and stability of the ROP four α-helix bundle protein

Michael W Lassalle, Hans-Jürgen Hinz, Herbert Wenzel, Metaxia Vlassi, Michael Kokkinidis, Giovanni Cesareni

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 596 KB

english, 1998

22

A correlation between the loss of hydrophobic core packing interactions and protein stability

Metaxia Vlassi, Gianni Cesareni, Michael Kokkinidis

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 306 KB

english, 1999

23

Novel Structural Features of the Human Histocompatibility Molecules HLA-DQ as Revealed by Modeling Based on the Published Structure of the Related Molecule HLA-DR

Kostas Paliakasis, John Routsias, Kyriacos Petratos, Christos Ouzounis, Michael Kokkinidis, George K. Papadopoulos

Journal:

Journal of Structural Biology

Year:

1996

Language:

english

File:

PDF, 1.13 MB

english, 1996

24

Crystal structure of Z-Aib-Aib-Aib-Ala-Ala-Aib-OtBu, a hexapeptide fragment of trichotoxin

Michael Kokkinidis, Demetrius Tsernoglou, Hans Brückner

Journal:

Biochemical and Biophysical Research Communications

Year:

1986

Language:

english

File:

PDF, 357 KB

english, 1986

25

Structural flexibility of Aib-containing peptides: The N-terminal tripeptide of trichotoxin

Renate Gessmann, Hans Brueckner, Michael Kokkinidis

Journal:

Biochemical and Biophysical Research Communications

Year:

1991

Language:

english

File:

PDF, 409 KB

english, 1991

26

Purification, crystallization and preliminary X-ray diffraction studies of the PvuII endonuclease

Alekos Athanasiadis, Michael Kokkinidis

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 288 KB

english, 1991

27

On the quaternary association of the type III secretion system HrcQB-C protein: Experimental evidence differentiates among the various oligomerization models

Vasiliki E. Fadouloglou, Marina N. Bastaki, Alison E. Ashcroft, Simon E.V. Phillips, Nicholas J. Panopoulos, Nicholas M. Glykos, Michael Kokkinidis

Journal:

Journal of Structural Biology

Year:

2009

Language:

english

File:

PDF, 3.68 MB

english, 2009

28

Crystal structure of L-Pro-L-Leu-Aib-Aib-L-Glu-L-Valol, the C-terminal hexapeptide fragment of trichotoxin

Michael Kokkinidis, David W. Banner, Demetrius Tsernoglou, Hans Brückner

Journal:

Biochemical and Biophysical Research Communications

Year:

1986

Language:

english

File:

PDF, 331 KB

english, 1986

29

Structural and Biochemical Characterization of a New Mg2+ Binding Site Near Tyr94 in the Restriction Endonuclease PvuII

Aspasia Spyridaki, Claudia Matzen, Thomas Lanio, Albert Jeltsch, Andras Simoncsits, Alekos Athanasiadis, Eva Scheuring-Vanamee, Michael Kokkinidis, Alfred Pingoud

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.09 MB

english, 2003

30

Cloning and characterization of the gene encoding PspPI methyltransferase from the Antarctic psychrotroph Psychrobacter sp. strain TA137.: Predicted interactions with DNA and organization of the variable region

Maria Rina, Frederic Caufrier, Maria Markaki, Konstantinos Mavromatis, Michael Kokkinidis, Vassilis Bouriotis

Journal:

Year:

1997

Language:

english

File:

PDF, 477 KB

english, 1997

31

Structure of the ColE1 Rop protein at 1.7 Å resolution

Banner, David W., Kokkinidis, Michael, Tsernoglou, Demetrius

Journal:

Journal of Molecular Biology

Year:

1987

Language:

english

File:

PDF, 1.84 MB

english, 1987

32

Recognition of Diverse Sequences by Class I Zinc Fingers: Asymmetries and Indirect Effects on Specificity in the Interaction between CF2II and A+T-Rich Sequence Elements

Joseph A. Gogos, Jingmin Jin, Hong Wan, Michael Kokkinidis and Fotis C. Kafatos

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.21 MB

english, 1996

33

Loopless Rop: Structure and Dynamics of an Engineered Homotetrameric Variant of the Repressor of Primer Protein

Glykos, Nicholas M., Papanikolau, Yannis, Vlassi, Metaxia, Kotsifaki, Dina, Cesareni, Giovanni, Kokkinidis, Michael

Journal:

Year:

2006

Language:

english

File:

PDF, 2.04 MB

english, 2006

34

Molecular Dynamics Simulations of BcZBP , A Deacetylase from Bacillus cereus : Active Site Loops Determine Substrate Accessibility and Specificity

Fadouloglou, Vasiliki E., Stavrakoudis, Athanassios, Bouriotis, Vassilis, Kokkinidis, Michael, Glykos, Nicholas M.

Journal:

Journal of Chemical Theory and Computation

Year:

2009

Language:

english

File:

PDF, 7.29 MB

english, 2009

35

Structure determination through homology modelling and torsion-angle simulated annealing: application to a polysaccharide deacetylase from Bacillus cereus

Fadouloglou, Vasiliki E., Kapanidou, Maria, Agiomirgianaki, Athanasia, Arnaouteli, Sofia, Bouriotis, Vassilis, Glykos, Nicholas M., Kokkinidis, Michael

Journal:

Acta Crystallographica Section D Biological Crystallography

Year:

2013

Language:

english

File:

PDF, 2.39 MB

english, 2013

36

Relationships between sequence and structure for the four-α-helix bundle tertiary motif in proteins

Paliakasis, Costas D., Kokkinidis, Michael

Journal:

Protein Engineering Design and Selection

Year:

1992

Language:

english

File:

PDF, 2.62 MB

english, 1992

37

The crystal structure of the conformationally constrained peptide Z-(Aib)6-OBut

Vlassi, Metaxia, Brueckner, Hans, Kokkinidis, Michael

Journal:

Zeitschrift für Kristallographie - Crystalline Materials

Year:

1992

Language:

english

File:

PDF, 406 KB

english, 1992

38

Side-chain interactions in the regulatory domain of human glutamate dehydrogenase determine basal activity and regulation

Mastorodemos, Vasileios, Kanavouras, Konstantinos, Sundaram, Shobana, Providaki, Maria, Petraki, Zoe, Kokkinidis, Michael, Zaganas, Ioannis, Logothetis, Diomedes E., Plaitakis, Andreas

Journal:

Journal of Neurochemistry

Year:

2015

Language:

english

File:

PDF, 871 KB

english, 2015

39

Controlling the Enzymatic Activity of a Restriction Enzyme by Light

Benno Schierling, Ann-Josée Noël, Wolfgang Wende, Le Thi Hien, Eugeny Volkov, Elena Kubareva, Tatiana Oretskaya, Michael Kokkinidis, Andreas Römpp, Bernhard Spengler, Alfred Pingoud and Robert Huber

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.35 MB

english, 2010

40

The effect of in-hospital acquired thrombocytopenia on the outcome of patients with acute coronary syndromes: A systematic review and meta-analysis

Oikonomou, Evangelos K., Repanas, Theodoros I., Papanastasiou, Christos, Kokkinidis, Damianos G., Miligkos, Michael, Feher, Attila, Gupta, Dipti, Kampaktsis, Polydoros N.

Journal:

Thrombosis Research

Year:

2016

Language:

english

File:

PDF, 1.38 MB

english, 2016

41

Atrial fibrillation and cognitive function in patients with heart failure: a systematic review and meta-analysis

Myserlis, Pavlos G., Malli, Antonia, Kalaitzoglou, Dimitrios K., Kalaitzidis, Grigorios, Miligkos, Michael, Kokkinidis, Damianos G., Kalogeropoulos, Andreas P.

Journal:

Heart Failure Reviews

Year:

2017

Language:

english

File:

PDF, 789 KB

english, 2017

42

Expression, purification and crystallization of a protein resulting from the inversion of the amino-acid sequence of a helical bundle

Kefala, Aikaterini, Kotsifaki, Dina, Providaki, Mary, Amprazi, Maria, Kokkinidis, Michael

Journal:

Acta Crystallographica Section F Structural Biology Communications

Year:

2017

Language:

english

File:

PDF, 476 KB

english, 2017

43

Crystal structures of two polysaccharide deacetylases from Bacillus cereus

Fadouloglou, Vasiliki, Aleka, Tsalafouta, Bouriotis, Vassilis, Glykos, Nicholas, Kokkinidis, Michael

Journal:

Acta Crystallographica Section A Foundations of Crystallography

Year:

2013

Language:

english

File:

PDF, 311 KB

english, 2013

44

The crystal structure of the conformationally constrained peptide Z-(Aib) 6 -OBu t

Vlassi, Metaxia, Brueckner, Hans, Kokkinidis, Michael

Journal:

Zeitschrift für Kristallographie

Year:

1992

Language:

english

File:

PDF, 810 KB

english, 1992

45

Dynamic Characterization of the Human Heme Nitric Oxide/Oxygen (HNOX) Domain under the Influence of Diatomic Gaseous Ligands

Khalid, Rana, Siddiqi, Abdul, Mylonas, Efstratios, Maryam, Arooma, Kokkinidis, Michael

Journal:

International Journal of Molecular Sciences

Year:

2019

File:

PDF, 4.43 MB

2019

46

[Advances in Protein Chemistry and Structural Biology] || Catalytic activity regulation through post-translational modification: the expanding universe of protein diversity

Kokkinidis, Michael

Year:

2020

File:

PDF, 2.41 MB

2020

47

Probing the Structural Dynamics of the Catalytic Domain of Human Soluble Guanylate Cyclase

Khalid, Rana Rehan, Maryam, Arooma, Sezerman, Osman Ugur, Mylonas, Efstratios, Siddiqi, Abdul Rauf, Kokkinidis, Michael

Journal:

Scientific Reports

Year:

2020

File:

PDF, 3.46 MB

2020

48

Evaluation of the spatiotemporal effects of bisphenol A on the leaves of the seagrass Cymodocea nodosa

Adamakis, Ioannis-Dimosthenis S., Malea, Paraskevi, Sperdouli, Ilektra, Panteris, Emmanuel, Kokkinidi, Danae, Moustakas, Michael

Journal:

Journal of Hazardous Materials

Year:

2021

File:

PDF, 16.41 MB

2021